species:   Scscl
pid:       PID1578
parent:    Ssc-milR-54
paralog:   
locus:     NW_001820815.1:677906-678000
matures:   ['GCAGGGUUUACAUGAUUGCCUUC', 'UUGUAAUUGUGGUCAUCCUCGUCC']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820815.1:677906-678000

0 out of bounds
4 alignments
4 proper strand
3 stranded perfect matches

                            ***********************    ***************                         
GGGGGCUAGGGCAGGGUUUACAUGAUUGCCUUCGCAGGGGGGGUUCGGGCCGGUAGGCCUUUUGGGGUUGUAAUUGUGGUCAUCCUCGUCCACUA
........(((((((((...(((((((((..((.((((........(((((....))))))))).))..)))))))))...))))).))))....
----------GCAGGGUUUACAUGAUUGCCUUC-------------------------------------------------------------- l=23 a=0 c
-------------------------------------------------------------------UUGUAAUUGUGGUCAUCCUCGUCC---- l=24 a=0 c*
------------------------------UUCGCAGGGGGGGUUCGGGCC-------------------------------------------- l=21 a=1 ma
---------------------------------------------------------CCUUUUGGGGUUG------------------------- l=13 a=0 ma*

------------------------------UUCGCAGGGGGGGUUCGGGCC-------------------------------------------- l=21 a=1 (ma)
----------------------------------CAGGGGGGGUUCGGGCCGGa----------------------------------------- l=20 a=1 
-------------------------------------------UUCGGGCCGGUAGGCCUUUUG------------------------------- l=21 a=1 
-------------------------------------------UUCGGGCCGGUAGGCCUUUUGG------------------------------ l=22 a=1 

mb-01010
ax-1001011
ku-01
ss-110111101000
fn-011
